Articles à comité de lecture


Barouillet, C; Vasselon, V; Keck, F; Millet, L; Etienne, D; Galop, D; Rius, D; Domaizon, I.  Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes    SCIENTIFIC REPORTS    2022    12    1 7899    10.1038/s41598-022-12041-7

 Vagnon, C; Bazin, S; Cattaneo, F; Goulon, C; Guillard, J; Frossard, V. The opportunistic trophic behaviour of the European catfish (Silurus glanis) in a recently colonised large peri-alpine lake    ECOLOGY OF FRESHWATER FISH 2022    31    4    650    661        10.1111/eff.12659

Vagnon, C; Cattaneo, F; Goulon, C; Guillard, J; Frossard, V. The vulnerability of whitefish (Coregonus lavaretus) to the invasive European catfish (Silurus glanis) in a large peri-Alpine lake CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES  10.1139/cjfas-2021-0310

Vagnon, C; Rohr, RP; Bersier, LF; Cattaneo, F; Guillard, J; Frossard, V. Combining food web theory and population dynamics to assess the impact of invasive species    FRONTIERS IN ECOLOGY AND EVOLUTION    2022    10   913954    10.3389/fevo.2022.913954

Vagnon, C; Cattaneo, F; Guillard, J; Frossard, V    Inferring the trophic attributes and consequences of co-occurring lake invaders using an allometric niche model    BIOLOGICAL INVASIONS    2022    24    6    1661    1676    10.1007/s10530-022-02745-2

 Rautureau, C; Goulon, C; Guillard, J    In situ TS detections using two generations of echo-sounder, EK60 and EK80: the continuity of fishery acoustic data in lakes    FISHERIES RESEARCH    2022    249    106237    10.1016/j.fishres.2022.106237

 Hervé, A; I, Domaizon; J- Baudoin ; T Dejean; P Gibert; P Jean; T Peroux; J-C Raymond; A Valentini; M Vautier; et al.    "Spatio-temporal variability of eDNA signal and its  implication for fish monitoring in lakes"    PLOS ONE    2022    17    8    e0272660    10.1371/journal.pone.0272660

 Ezzedine, JA; Scheifler, M; Desdevises, Y; Jacquet, S. A Comparative Study of the Dynamics and Diversity of Bdellovibrio and Like Organisms in Lakes Annecy and Geneva    MICROORGANISMS    2022    10    101960    10.3390/microorganisms10101960 

Rivera, S; Rimet F; Vasselon V ; Vautier M ; Domaizon I ; Bouchez A. Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects    MOLECULAR ECOLOGY RESSOURCES    2022    22    4    1140    1453    10.1111/1755-0998.13568

Deyle, ER; Boufard, D, Frosard, V; Schewfel, R; Melak, J; Sugihara G. A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures    PNAS    JUNE    2022    119    26    e2102466119    10.1073/pnas.2102466119

 Blanluet, A; Gastauer, S; Cattaneo, F; Goulon, C; Grimardias, D; Guillard, J. Discrimination between schools and submerged trees in reservoirs: a preliminary approach using narrowband and broadband acoustics CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES    2022    79    5     738    748        10.1139/cjfas-2021-0087

Salmaso, N; Vasselon, V; Rimet, F; Vautier, M; Elersek, T; Boscaini, A; Donati, C; Moretto, M; Pindo, M; Riccioni, G; Stefani, E; Capelli, C; Lepori, F; Kurmayer, R; Mischke, U; Klemencic, AK; Novak, K; Greco, C; Franzini, G; Fusato, G; Giacomazzi, F; Lea, A; Menegon, S; Zampieri, C; Macor, A; Virgilio, D; Zanut, E; Zorza, R; Buzzi, F; Domaizon, I    DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region    SCIENCE OF THE TOTAL ENVIRONMENT    AUG 15    2022    834 155175    10.1016/j.scitotenv.2022.155175 

Haltiner, L; Zhang, H; Anneville, O; De Ventura, L; DeWeber, JT; Hesselschwerdt, J; Koss, M; Rasconi, S; Rothhaupt, KO; Schick, R; Schmidt, B; Spaak, P; Teiber-Slessegger, P; Wessels, M; Zeh, M; Dennis, SR. The distribution and spread of quagga mussels in perialpine lakes north of the Alps    AQUATIC INVASIONS    2022    17    2    153    173    10.3391/ai.2022.17.2.02 

Chang, CW; Miki, T; Ye, H; Souissi, S; Adrian, R; Anneville, O; Agasild, H; Ban, S; Be'eri-Shlevin, Y; Chiang, YR; Feuchtmayr, H; Gal, G; Ichise, S; Kagami, M; Kumagai, M; Liu, X; Matsuzaki, SIS; Manca, MM; Noges, P; Piscia, R; Rogora, M; Shiah, FK; Thackeray, SJ; Widdicombe, CE; Wu, JZ; Zohary, T; Hsieh, CH    Causal networks of phytoplankton diversity and biomass are modulated by environmental context    NATURE COMMUNICATIONS    MAR 3    2022    13    1     1140    10.1038/s41467-022-28761-3

Golub, M; Thiery, W; Marce, R; Pierson, D; Vanderkelen, I; Mercado-Bettin, D; Woolway, RI; Grant, L; Jennings, E; Kraemer, BM; Schewe, J; Zhao, F; Frieler, K; Mengel, M; Bogomolov, VY; Bouffard, D; Cote, M; Couture, RM; Debolskiy, AV; Droppers, B; Gal, G; Guo, MY; Janssen, ABG; Kirillin, G; Ladwig, R; Magee, M; Moore, T; Perroud, M; Piccolroaz, S; Vinnaa, LR; Schmid, M; Shatwell, T; Stepanenko, VM; Tan, ZL; Woodward, B; Yao, HX; Adrian, R; Allan, M; Anneville, O; Arvola, L; Atkins, K; Boegman, L; Carey, C; Christianson, K; de Eyto, E; DeGasperi, C; Grechushnikova, M; Hejzlar, J; Joehnk, K; Jones, ID; Laas, A; Mackay, EB; Mammarella, I; Markensten, H; McBride, C; Ozkundakci, D; Potes, M; Rinke, K; Robertson, D; Rusak, JA; Salgado, R; van der Linden, L; Verburg, P; Wain, D; Ward, NK; Wollrab, S; Zdorovennova, G    A framework for ensemble modelling of climate change impacts on lakes worldwide: the ISIMIP Lake Sector    GEOSCIENTIFIC MODEL DEVELOPMENT    2022    15 11        4597    4623    10.5194/gmd-15-4597-2022 

Réalis-Doyelle, E., Cottin, N., Daufresne, M., Naffrechoux, E., Reynaud, S., Guillard, J.    "Evolution of pace-of-life syndrome under conditions of maternal PCB  contamination and global warming in early life stages of cold stenothermic fish (Arctic char)"    AQUATIC TOXICOLOGY    JAN     2023    255    106396     10.1016/j.aquatox.2023.106396 http://dx.doi,org/10.1016/j.aquatox.2023.106396

Desgué-Itier, O., Melo Vieira Soares, L., Anneville, O., Bouffard, D., Chanudet, V., Danis, P.-A., Domaizon, I., Guillard, J., Mazure, T., Sharaf, N., Soulignac, F., Tran-Khac, V., Vinçon-Leite, B., and Jenny, J.-P.: Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes, EGUsphere [preprint],, 2022.    

Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes    Hydrology and Earth System Sciences    2023    27    3 


Bieito Fernández Castro, Hannah Elisa Chmiel, Camille Minaudo, Shubham Krishna, Pascal Perolo, Serena Rasconi, and Alfred Wüest. Primary and Net Ecosystem Production in a Large Lake Diagnosed From High-Resolution Oxygen Measurements. Water Resources Research, 57(5), May 2021. doi: 10.1029/2020WR029283 

Nathalie Lécrivain, Victor Frossard, Emmanuel Naffrechoux, and Bernard Clément. Looking at Organic Pollutants (OPs) Signatures in Littoral Sediments to Assess the Influence of a Local Urban Source at the Whole Lake Scale. Polycyclic Aromatic Compounds, 41(5):950–962, 2021b. doi:10.1080/10406638.2019.1631195 

Nathalie Lécrivain, Bernard Clément, Aymeric Dabrin, Juliette Seigle-Ferrand, Damien Bouffard, Emmanuel NAFFRECHOUX, and Victor Frossard. Water-level fluctuation enhances sediment and trace metal mobility in lake littoral. Chemosphere, 264(2):128451, February 2021a. doi:10.1016/j.chemosphere.2020.128451 

Sinziana Rivera, Frédéric Rimet, Valentin Vasselon, Marine Vautier, Isabelle Domaizon, and Agnes Bouchez. Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects. Molecular Ecology Resources, 2021b. doi:10.1111/1755-0998.13568 

Emilie Lyautey, Elodie Billard, Nathalie Tissot, Stéphan Jacquet, and Isabelle Domaizon. Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments. Microbial ecology, 2021. doi: 10.1007/s00248-021-01689-9 

Karan Kakouei, Benjamin Kraemer, Orlane Anneville, Laurence Carvalho, Heidrun Feuchtmayr, Jennifer Graham, Scott Higgins, Francesco Pomati, Lars Rudstam, Jason Stockwell, Stephen Thackeray, Michael Vanni, and Rita Adrian. Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections. Global Change Biology, 27(24): 6409–6422, December 2021. doi: 10.1111/gcb.15866 

Jade Ezzedine, A. Janicot, Serena Rasconi, Isabelle Domaizon, and Stéphan Jacquet. Short-term dynamics of Bdellovibrio and like organisms in Lake Geneva in response to a simulated climatic extreme event. Microbial ecology, October 2021a. doi: 10.1007/s00248-021-01875-9 

Benjamin Kraemer, Rachel Pilla, R. Iestyn Woolway, Orlane Anneville, Syuhei Ban, William Colom-Montero, Shawn Devlin, Martin Dokulil, Evelyn Gaiser, K. David Hambright, Dag Hessen, Scott Higgins, Klaus Jöhnk, Wendel Keller, Lesley Knoll, Peter Leavitt, Fabio Lepori, Martin Luger,Stephen Maberly, Dörthe Müller-Navarra, Andrew Paterson, Donald Pierson, David Richardson, Michela Rogora, James Rusak, Steven Sadro, Nico Salmaso, Martin Schmid, Eugene Silow, Ruben Sommaruga, Julio Stelzer, Dietmar Straile, Wim Thiery, Maxim Timofeyev, Piet Verburg, Gesa
Weyhenmeyer, and Rita Adrian. Climate change drives widespread shifts in lake thermal habitat. Nature Climate Change, 11(6):521–529, June 2021. doi: 10.1038/s41558-021-01060-3 

Chloé Vagnon, Franck Cattanéo, Chloé Goulon, David Grimardias, Jean Guillard, and Victor Frossard. An allometric niche model for species interactions in temperate freshwater ecosystems. Ecosphere, 12(3), March 2021. doi: 10.1002/ecs2.3420 

Rosalie Bruel, Stéphanie Girardclos, Aldo Marchetto, Katrina Kremer, Christian Crouzet, Jean-Louis Reyss, Pierre Sabatier, and Marie-Elodie Perga. Reframing Lake Geneva ecological trajectory in a context of multiple but asynchronous pressures. Journal of Paleolimnology, 65(3):353–368, March 2021. doi: 10.1007/s10933-021-00176-y 

Lisandrina Mari, Martin Daufresne, Jean Guillard, Guillaume Evanno, and Emilien Lasne. Elevated temperature and deposited sediment jointly affect early life history traits in southernmost Arctic char populations. Canadian Journal of Fisheries and Aquatic Sciences, 78(6):744–751, January 2021. doi:10.1139/cjfas-2020-0256

Shubham Krishna, Hugo N Ulloa, Onur Kerimoglu, Camille Minaudo, Orlane Anneville, and Alfred Wüest. Model-based data analysis of the effect of winter mixing on primary production in a lake under reoligotrophication. Ecological Modelling, 440:109401, January 2021. doi:10.1016/j.ecolmodel.2020.109401.

Marthe Moiron, Frédéric Rimet, Cyrille Girel, and Stéphan Jacquet. Die hard in Lake Bourget! The case of Planktothrix rubescens reborn. Annales de Limnologie - International Journal of Limnology, 57:19, 2021. doi: 10.1051/limn/2021014

Jonathan P Doubek, Orlane Anneville, Gaël Dur, Aleksandra M Lewandowska, Vijay P Patil, James A Rusak, Nico Salmaso, Christian Torsten Seltmann, Dietmar Straile, Pablo Urrutia-Cordero, Patrick Venail, Rita Adrian, Mar´ıa B Alfonso, Curtis L DeGasperi, Elvira Eyto, Heidrun Feuchtmayr, Evelyn E Gaiser, Scott F Girdner, Jennifer L Graham, Hans-Peter Grossart, Josef Hejzlar, Stéphan Jacquet, Georgiy Kirillin, Mar´ıa E Llames, Shin-ichiro S Matsuzaki, Emily R Nodine, Maria Cintia Piccolo, Don C Pierson, Alon Rimmer, Lars G Rudstam, Steven Sadro, Hilary M Swain,Stephen J Thackeray, Wim Thiery, Piet Verburg, Tamar Zohary, and Jason D Stockwell. The extent and variability of storm-induced temperature changes in lakes measured with long-term and high-frequency data. Limnology and Oceanography, 66(5):1979–1992, 2021. doi: 10.1002/lno.11739


Frédéric Rimet, Orlane Anneville, Denis Barbet, Cécile Chardon, Laura Crepin, et al.. The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public. Journal of Limnology, 2020, 79 (2), pp.164-178. ff10.4081/jlimnol.2020.1944ff. ffhal-02916312 

Blanluet, A., Goulon, C., Lebourges-Dhaussy, A. et al. Effect of a Transducer Horizontality Default on Lake Fish Stock Assessment. Acoust Aust (2020).

Michaël  Girard, Chloé  Goulon, Anne  Tessier, Pascal  Vonlanthen, Jean  Guillard ;  Comparisons of day-time and night-time hydroacoustic surveys in temperate lakes Aquat. Living Resour. 33 9 (2020) DOI: 10.1051/alr/2020011

Jonathan Derot, Hiroshi Yajima, Stéphan Jacquet, Advances in forecasting harmful algal blooms using machine learning models: A case study with Planktothrix rubescens in Lake Geneva, Harmful Algae, Volume 99, 2020, 101906, ISSN 1568-9883,

 Marine Lemaire, Jean Guillard, Orlane Anneville, Jérémy Lobry, Major biomass fluctuations in lake food webs – An example in the peri-alpine Lake Annecy, Journal of Great Lakes Research, Volume 46, Issue 4, 2020, Pages 798-812,ISSN 0380-1330,

Nathalie Lécrivain, Bernard Clément, Aymeric Dabrin, Juliette Seigle-Ferrand, Damien Bouffard, Emmanuel Naffrechoux, Victor Frossard, Water-level fluctuation enhances sediment and trace metal mobility in lake littoral,  Chemosphere,  Volume 264, Part 2, 2021, 128451, ISSN 0045-6535,

 Theo Baracchini, Stef Hummel, Martin Verlaan, Andrea Cimatoribus, Alfred Wüest, Damien Bouffard,An automated calibration framework and open source tools for 3D lake hydrodynamic models, Environmental Modelling & Software, Volume 134, 2020, 104787, ISSN 1364-8152,

 Baracchini, T., Chu, P. Y., Šukys, J., Lieberherr, G., Wunderle, S., Wüest, A., and Bouffard, D.: Data assimilation of in situ and satellite remote sensing data to 3D hydrodynamic lake models: a case study using Delft3D-FLOW v4.03 and OpenDA v2.4, Geosci. Model Dev., 13, 1267–1284,, 2020.


Articles dans des revues à comité de lecture répertoriées dans la base ISI Web of Knowledge : (ACL)

Anneville O., Chang C.W., Dur G., Souissi S., Rimet F., Hsieh C.H., 2019. The paradox of re-oligotrophication: the role of bottom-up versus top-down controls on the phytoplankton community. Oikos. 128 : 1666-1677.

Bruel R., Girardclos S., Marchetto A., Kremer K., Crouzet C., Reyss J.-L., et al. (2019). Reframing Lake Geneva ecological trajectory in a context of multiple but asynchronous drivers. EarthArXiv.

Lécrivain N., Frossard V., Clément B., 2019. Changes in mobility of trace metals at the sediment-water-biota interfaces following laboratory drying and re-immersion of a lacustrine sediment. Environmental Science and Pollution Research, 26: 14050-14058

Lécrivain N., Frossard V., Clément B., 2019. Contribution of trace metallic elements to weakly contaminated lacustrine sediments: effects on benthic and pelagic organisms through multi-species laboratory bioassays. Ecotoxicology, 28 : 154–166

Lécrivain N., Frossard V., Naffrechoux E., Clément B., 2019. Looking at Organic Pollutants (OPs) signatures in Littoral sediments to assess the influence of a local urban source at the whole lake scale. Polycyclic Aromatic Compounds,

Lepère C., Domaizon I., Humbert J-F., Jardillier L., Hugoni M., Debroas D., 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7:e6247

Masset T., Frossard V., Perga M.E., Cottin N., Piot C., Cachera S., Naffrechoux E., 2019. Trophic position and individual feeding habits as drivers of differential PCB bioaccumulation in fish populations. Science of the Total Environment, 674: 472-481.

Metz S., Singer D., Domaizon I., Unrein F., Lara E., 2019. Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches. Environmental Microbiology, 21(10): 3885-3895.

Mouget, A., Goulon, C., Axenrot, T., Balk, H., Lebourges-Dhaussy, A., Godlewska, M., Guillard, J., 2019. Including 38 kHz in the standardization protocol for hydroacoustic fish surveys in temperate lakes. Remote sensing in Ecology and Conservation, 5(4): 332–345 doi: 10.1002/rse2.112

Nouchi, V., Kutser, T., Wüest, A. et al. Resolving biogeochemical processes in lakes using remote sensing. Aquat Sci 81, 27 (2019).

Paix B., Ezzedine J.A., Jacquet S., 2019. Diversity, dynamics, and distribution of Bdellovibrio and like organisms in Perialpine Lakes. Applied and Environmental Microbiology 85 (6) e02494-18; DOI: 10.1128/AEM.02494-18

Rimet F., Feret L., Bouchez A., Dorioz J.M., Dambrine E. (2019) Factors influencing the heterogeneity of benthic diatom communities within alpine lakes. Hydrobiologia, 839: 103-118.

 oulignac F., Anneville O., Bouffard D., Chanudet V., Dambrine E., Guénand Y., Harmel T., Ibelings B., Trevisan D., Uittenbogaard R., Danis P.-A., 2019. Contribution of 3D coupled hydrodynamic-ecological modeling to assess the representativeness of a sampling protocol for lake water quality assessment. Knowledge & Management of Aquatic Ecosystems. 420, 42.

Weyhenmeyer G. et al., 2019. Widespread diminishing anthropogenic effects on calcium in freshwaters. Scientific Report 9, 10450 doi:10.1038/s41598-019-46838-w

 Articles dans des revues non répertoriées dans la base ISI Web of Knowledge

 Baulaz Y., 2019, Chroniques de la pêche au Léman, Les voix du Léman, 3 p.

Ezzedine J.A., Jacquet S., 2019. Diversité et rôles des bactéries prédatrices de bactéries: Zoom sur les Bdellovibrio et organismes apparentés (BALOs). Notes Académiques de l'Académie d'Agriculture de France 2 : 1-25

 Frossard V., Cattanéo F., Domaizon I., Goulon C., Grimardias D., Guillard J., Lucas S., Ropars C. et Vagnon C., 2019. Le silure (Silurus glanis) dans les grands lacs alpins : un modèle d’étude émergent. Les voix du Léman / APALLF 42

Jacquet, S., Domaizon, I., Napoleoni R., Bosson J.B., 2019. Des lacs sous surveillance. Nature & Patrimoine des Pays de Savoie, pp 8-12.

Lohéac, B., Caudron, A., Guillard, J., 2019. Communautés piscicoles introduites des lacs d’altitude : approches scientifiques et influences idéologiques. Revue des sciences de l'eau, 32, (1), 39–50.


Anneville, O., Dur, G., Rimet, F., Souissi, S., 2018. Plasticity in phytoplankton annual periodicity: an adaptation to long-term environmental changes. Hydrobiologia 824, 121–141.

Bouffard, D., Kiefer, I., Wüest, A., Wunderle, S., Odermatt, D., 2018. Are surface temperature and chlorophyll in a large deep lake related? An analysis based on satellite observations in synergy with hydrodynamic modelling and in-situ data. Remote Sensing of Environment 209, 510–523.

Bruce, L.C., Frassl, M.A., Arhonditsis, G.B., Gal, G., Hamilton, D.P., Hanson, P.C., Hetherington, A.L., Melack, J.M., Read, J.S., Rinke, K., Rigosi, A., Trolle, D., Winslow, L., Adrian, R., Ayala, A.I., Bocaniov, S.A., Boehrer, B., Boon, C., Brookes, J.D., Bueche, T., Busch, B.D., Copetti, D., Cortés, A., de Eyto, E., Elliott, J.A., Gallina, N., Gilboa, Y., Guyennon, N., Huang, L., Kerimoglu, O., Lenters, J.D., MacIntyre, S., Makler-Pick, V., McBride, C.G., Moreira, S., Özkundakci, D., Pilotti, M., Rueda, F.J., Rusak, J.A., Samal, N.R., Schmid, M., Shatwell, T., Snorthheim, C., Soulignac, F., Valerio, G., van der Linden, L., Vetter, M., Vinçon-Leite, B., Wang, J., Weber, M., Wickramaratne, C., Woolway, R.I., Yao, H., Hipsey, M.R., 2018. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental Modelling & Software 102, 274–291.

Cimatoribus, A. A., Lemmin, U., Bouffard, D., & Barry, D. A. (2018). Nonlinear dynamics of the nearshore boundary layer of a large lake (Lake Geneva). Journal of Geophysical Research: Oceans, 123, 1016– 1031.

Frantz, A., Perga, M.-E., Guillard, J., 2018. Parasitic versus nutritional regulation of natural fish populations. Ecology and Evolution 8, 8713–8725.

Frossard, V., Fontvieille, D., 2018. What is the invasiveness of Hemimysis anomala (Crustacea, Mysidae) in the large deep Lake Bourget, France? Hydrobiologia 814, 219–232.

Frossard, V., Marchand, P., 2018. Littoral chironomids of a large Alpine lake: spatial variation and variables supporting diversity. Knowledge & Management of Aquatic Ecosystems 45.

Frossard, V., Rimet, F., Perga, M.-E., 2018. Causal networks reveal the dominance of bottom-up interactions in large, deep lakes. Ecological Modelling 368, 136–146.

Leach, T.H., Beisner, B.E., Carey, C.C., Pernica, P., Rose, K.C., Huot, Y., Brentrup, J.A., Domaizon, I., Grossart, H.-P., Ibelings, B.W., Jacquet, S., Kelly, P.T., Rusak, J.A., Stockwell, J.D., Straile, D., Verburg, P., 2018. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification: Patterns and drivers of DCM structure across lakes. Limnology and Oceanography 63, 628–646.

Lécrivain, N., Aurenche, V., Cottin, N., Frossard, V., Clément, B., 2018. Multi-contamination (heavy metals, polychlorinated biphenyls and polycyclic aromatic hydrocarbons) of littoral sediments and the associated ecological risk assessment in a large lake in France (Lake Bourget). Science of The Total Environment 619–620, 854–865.

Monchamp, M.-E., Spaak, P., Domaizon, I., Dubois, N., Bouffard, D., Pomati, F., 2018. Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution 2, 317–324.

Vincent Nouchi, Daniel Odermatt, Alfred Wüest & Damien Bouffard (2018) Effects of non-uniform vertical constituent profiles on remote sensing reflectance of oligo- to mesotrophic lakes, European Journal of Remote Sensing, 51:1, 808-821, DOI: 10.1080/22797254.2018.1493360

Parikka, K.J., Jacquet, S., Colombet, J., Guillaume, D., Le Romancer, M., 2018. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology 41, 1335–1352.

Pollet, T., Berdjeb, L., Chardon, C., Jacquet, S., 2018. Contrasting temporal patterns in ammonia-oxidizing archaeal community dynamics in two peri-alpine lakes with different trophic status. Aquatic Microbial Ecology 81, 95–108.

Rahaghi, A.I., Lemmin, U., Cimatoribus, A., Bouffard, D., Riffler, M., Wunderle, S., Barry, D.A., 2018. Improving surface heat flux estimation for a large lake through model optimization and two-point calibration: The case of Lake Geneva: Surface heat flux calibration. Limnology and Oceanography: Methods 16, 576–593.

Rimet, F., Druart, J.-C., 2018. A trait database for Phytoplankton of temperate lakes. Annales de Limnologie - International Journal of Limnology 54, 18.

Rivera, S.F., Vasselon, V., Jacquet, S., Bouchez, A., Ariztegui, D., Rimet, F., 2018. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 807, 37–51.

Schwefel, R., Steinsberger, T., Bouffard, D., Bryant, L.D., Müller, B., Wüest, A., 2018. Using small-scale measurements to estimate hypolimnetic oxygen depletion in a deep lake: Oxygen depletion in a deep lake. Limnology and Oceanography 63, S54–S67.

Soulignac, F., Danis, P.-A., Bouffard, D., Chanudet, V., Dambrine, E., Guénand, Y., Harmel, T., Ibelings, B.W., Trevisan, D., Uittenbogaard, R., Anneville, O., 2018. Using 3D modeling and remote sensing capabilities for a better understanding of spatio-temporal heterogeneities of phytoplankton abundance in large lakes. Journal of Great Lakes Research 44, 756–764.

Vasselon, V., Bouchez, A., Rimet, F., Jacquet, S., Trobajo, R., Corniquel, M., Tapolczai, K., Domaizon, I., 2018. Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology and Evolution 9, 1060–1069.


Capo, E., Debroas, D., Arnaud, F., Perga, M.-E., Chardon, C., Domaizon, I., 2017. Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming: Long-term dynamics of microbial eukaryotes. Environmental Microbiology 19, 2873–2892.

David, P., Thébault, E., Anneville, O., Duyck, P.-F., Chapuis, E., Loeuille, N., 2017. Impacts of Invasive Species on Food Webs, in: Advances in Ecological Research. Elsevier, pp. 1–60.

Debroas, D., Domaizon, I., Humbert, J.-F., Jardillier, L., Lepère, C., Oudart, A., Taïb, N., 2017. Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data. FEMS Microbiology Ecology 93.

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Date de modification : 06 février 2024 | Date de création : 06 mai 2014 | Rédaction : ID / DB